Installation on Solaris/SPARC

Step-by-step procedure

# Prepare directory and download *magpar*.
cd $HOME  # $HOME
mkdir magpar-0.8
cd magpar-0.8  # $HOME/magpar-0.8
wget http://www.magpar.net/static/magpar/download/magpar-0_8.tar.gz
tar xzf magpar-0_8.tar.gz
cd magpar-0_8  # $HOME/magpar-0.8/magpar-0_8
MAGPAR_HOME=$PWD; export MAGPAR_HOME  # $HOME/magpar-0.8/magpar-0_8
PD=$MAGPAR_HOME/libs; export PD  # $HOME/magpar-0.8/magpar-0_8/libs

# *ParMetis*
cd $PD  # $HOME/magpar-0.8/magpar-0_8/libs
lib=ParMetis-3.1.1
wget -N http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/$lib.tar.gz
tar xzf $lib.tar.gz
cd $lib  # $HOME/magpar-0.8/magpar-0_8/libs/ParMetis-3.1.1
# :Note: ``ld`` needs the deprecated ``-xarch=v9b`` switch to use the correct library paths for 64bit!
#make "CC=mpcc -g -m64 -xarch=sparcvis2" "LD=mpcc -xarch=v9b" "XTRALIBS=-lmpi" "OPTFLAGS=-fast -xtarget=ultra4plus"  # with symbol table
make "CC=mpcc -m64 -xarch=sparcvis2" "LD=mpcc -xarch=v9b" "XTRALIBS=-lmpi" "OPTFLAGS=-fast -xtarget=ultra4plus"

# *SUNDIALS*
cd $PD  # $HOME/magpar-0.8/magpar-0_8/libs
lib=sundials-2.3.0
# get sundials-2.3.0.tar.gz
tar xzf $lib.tar.gz
cd $lib  # $HOME/magpar-0.8/magpar-0_8/libs/sundials-2.3.0
# :Note:
# Sun Studio's ``-fast`` expands to:
# -fns  -fsimple=2 -xarch -xbuiltin=%all -xcache -xchip -xdepend -xlibmil -xlibmopt -xmemalign -xO5 -xtarget=native
# and ``-xlibmil`` has problems with ``return fabs ();``.
# Changing this to ``return fabs (1);`` works, but may not be what was intended by the ``configure`` script.
patch -p1 < ../../../sundials_ss12hpc.diff
# ./configure --prefix=$PD/sundials --with-cflags="-g -fast -xtarget=ultra4plus -m64 -xarch=sparcvis2" --with-ldflags="-xarch=v9b" --with-mpicc=mpcc --with-mpif77=mpf77 --with-mpi-libs="-lmpi"  # with symbol table
./configure --prefix=$PD/sundials --with-cflags="-fast -xtarget=ultra4plus -m64 -xarch=sparcvis2" --with-ldflags="-xarch=v9b" --with-mpicc=mpcc --with-mpif77=mpf77 --with-mpi-libs="-lmpi"
make && make -i install

# *PETSc*
cd $PD  # $HOME/magpar-0.8/magpar-0_8/libs
lib=petsc-2.3.3-p15
wget ftp://ftp.mcs.anl.gov/pub/petsc/release-snapshots/$lib.tar.gz
tar xzf $lib.tar.gz
cd $lib  # $HOME/magpar-0.8/magpar-0_8/libs/petsc-2.3.3-p15
PETSC_DIR=$PD/$lib; export PETSC_DIR  # $HOME/magpar-0.8/magpar-0_8/libs/petsc-2.3.3-p15
# :Note: The configure scripts use the deprecated ``-xarch=v9`` switch for 64bit targets. Fixed to use ``-m64`` instead.
patch -p1 < ../../../petsc_ss12hpc.diff
# Give all options as parameters to the configure script instead of writing a configuration file.
# :Note: With ``--with-debugging=0`` *magpar* crashes.
unset PETSC_ARCH
#./config/configure.py --with-gnu-compilers=0 --with-64-bit-pointers=1 --with-precision=double --with-blas-lapack-lib=libsunperf.a --with-mpi-root="/opt/SUNWhpc" --with-x=0 --with-clanguage=C++ --with-debugging=1 --CC=mpcc --CXX=mpCC --FC=mpf77 --CFLAGS="-g -m64 -xarch=sparcvis2" --CXXFLAGS="-g -m64 -xarch=sparcvis2" --FFLAGS="-g -m64  -xarch=sparcvis2" --LDFLAGS="-xarch=v9b" --COPTFLAGS="-fast -xtarget=ultra4plus -xlic_lib=sunperf" --CXXOPTFLAGS="-fast -xtarget=ultra4plus -xlic_lib=sunperf" --FOPTFLAGS="-fast -xtarget=ultra4plus -xlic_lib=sunperf" --with-shared=0 --with-dynamic=0  # debug version with symbol table
./config/configure.py --with-gnu-compilers=0 --with-64-bit-pointers=1 --with-precision=double --with-blas-lapack-lib=libsunperf.a --with-mpi-root="/opt/SUNWhpc" --with-x=0 --with-clanguage=C++ --with-debugging=1 --CC=mpcc --CXX=mpCC --FC=mpf77 --CFLAGS="-m64 -xarch=sparcvis2" --CXXFLAGS="-m64 -xarch=sparcvis2" --FFLAGS="-m64  -xarch=sparcvis2" --LDFLAGS="-xarch=v9b" --COPTFLAGS="-fast -xtarget=ultra4plus -xlic_lib=sunperf" --CXXOPTFLAGS="-fast -xtarget=ultra4plus -xlic_lib=sunperf" --FOPTFLAGS="-fast -xtarget=ultra4plus -xlic_lib=sunperf" --with-shared=0 --with-dynamic=0
PETSC_ARCH=solaris2.10-cxx-debug; export PETSC_ARCH  # debug version
make all

# *TAO*
cd $PD  # $HOME/magpar-0.8/magpar-0_8/libs
lib=tao-1.9
wget -N http://www-unix.mcs.anl.gov/tao/download/$lib.tar.gz
tar xzf $lib.tar.gz
cd $lib  # $HOME/magpar-0.8/magpar-0_8/libs/tao-1.9
TAO_DIR=$PD/$lib; export TAO_DIR  # $HOME/magpar-0.8/magpar-0_8/libs/tao-1.9
# :Note: Sun Studio's C++ compiler does not provide ``isinf``.
patch -p1 < ../../../tao_ss12hpc.diff
make  # Options are taken from PETSc.

# *magpar*
cd $MAGPAR_HOME/src  # $HOME/magpar-0.8/magpar-0_8/src
cp Makefile.in.defaults Makefile.in.ss12hpc
# :Note: Sun Studio's C++ compiler does not support variable length arrays.
#        For workaround see ``http://forums.sun.com/thread.jspa?threadID=5348093``.
# :Note: ``PETSC_ARCH`` has to be adjusted in ``Makefile``.
patch -p1 < ../../src_ss12hpc.diff
cp -p Makefile.in.ss12hpc Makefile.in.$HOSTNAME

make varinfo | less  # Check compilation options.
# :Note: Some options are taken from PETSc.
#CC=mpcc CXX=mpCC F77=mpf77 FC=mpf77 F90=mpf90 CFLAGS="-g -m64 -xarch=sparcvis2 -DPNG -DZLIB" OPTFLAGS="-fast -xtarget=ultra4plus -xlic_lib=sunperf" EXTERNAL_LIB="-lpng -lz" make  # with symbol table
CC=mpcc CXX=mpCC F77=mpf77 FC=mpf77 F90=mpf90 CFLAGS="-m64 -xarch=sparcvis2 -DPNG -DZLIB" OPTFLAGS="-fast -xtarget=ultra4plus -xlic_lib=sunperf" EXTERNAL_LIB="-lpng -lz" make

# Run magpar by calling ``mprun -np <x> magpar.exe``.

Download

There are 4 attachment(s) stored for this page.

  • [get | view] (2009-10-01 18:17:24, 1.5 KB) [[attachment:petsc_ss12hpc.diff]]
  • [get | view] (2009-10-01 18:17:46, 4.4 KB) [[attachment:src_ss12hpc.diff]]
  • [get | view] (2009-10-01 18:17:09, 0.3 KB) [[attachment:sundials_ss12hpc.diff]]
  • [get | view] (2009-10-01 18:17:30, 0.9 KB) [[attachment:tao_ss12hpc.diff]]
 All files | Selected Files: delete move to page copy to page
Copyright (C) Werner Scholz 2010